Ecommerce Accounting Tools: Features, Integrations & Pricing (2025)

We maintain a neutral dataset of popular tools used to connect sales channels with accounting software. Compare accounting detail vs summaries, real-time vs payout sync, inventory & POS support, and pricing models.

Methodology & Disclosure

We evaluate integration tools based on three key criteria:

Accounting accuracy: How well does it handle COGS, fees, taxes, and refunds?
Setup time: How quickly can a small merchant get up and running?
Ongoing maintenance: How much manual work is required month to month?

Disclosure: Editor's Picks reflect our testing for small-merchant simplicity and accuracy. If we receive a referral fee from any tool, we mark it clearly. All data presented is factual and vendor-verified.

Filter Tools

Use Case

Sync Timing

Accounting Detail

Pricing Model

Integrates With

			Primary Integrations			Onboarding	Support
Webgility Editor's Pick	Both	Real-time	QuickBooks Online, QuickBooks Desktop, Shopify	Feature-based	$109/mo	Free	Chat, Email, Phone
A2X	Summary	Payout-based	QuickBooks Online, Xero, Shopify	Order-based	$19/mo	Free	Email, Chat
Synder	Detailed	Real-time	QuickBooks Online, QuickBooks Desktop, Shopify	Transaction-based	$52/mo	Free	Chat, Email, Phone
MyWorks	Detailed	Real-time	QuickBooks Online, QuickBooks Desktop, Shopify	Order-based	Free	Free	Chat, Email, Phone
Finaloop	Detailed	Real-time	Replaces QuickBooks/Xero, Shopify	Subscription + Service	Contact for pricing	Included	Email, Monthly review calls
Dext Commerce	Both	Batch	QuickBooks Online, QuickBooks Desktop, Shopify	Document-based	$22/mo	Free	Chat, Email
SOS Inventory	Detailed	Real-time	QuickBooks Online, Shopify	Feature-based	$59.95/mo	Free	Email, Phone
Linnworks	Summary	Batch	QuickBooks Online, Xero, Shopify	Order-based + Features	£150/mo	Paid	Email, Phone
Free Native Connectors	Summary	Payout-based	QuickBooks Online, QuickBooks Desktop, Shopify	Free	$0	None	Email

Webgility Editor's Pick

Webgility is an accounting-grade app that handles COGS, inventory, and multichannel sales with precision.

Detail: Both

Sync: Real-time

Pricing: Feature-based

From: $109/mo

View Details

A2X

A2X is a marketplace-focused integration that specializes in payout reconciliation and sales summaries.

Detail: Summary

Sync: Payout-based

Pricing: Order-based

From: $19/mo

View Details

Synder

Synder automates multi-platform ecommerce accounting with detailed transaction sync and smart categorization rules.

Detail: Detailed

Sync: Real-time

Pricing: Transaction-based

From: $52/mo

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MyWorks

MyWorks offers two-way sync between Shopify and QuickBooks with real-time updates and custom field mapping.

Detail: Detailed

Sync: Real-time

Pricing: Order-based

From: Free

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Finaloop

Finaloop replaces QuickBooks entirely with an all-in-one ecommerce accounting platform plus expert bookkeeping service.

Detail: Detailed

Sync: Real-time

Pricing: Subscription + Service

From: Contact for pricing

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Dext Commerce

Dext automates receipt capture and expense management with AI-powered data extraction for QuickBooks.

Detail: Both

Sync: Batch

Pricing: Document-based

From: $22/mo

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SOS Inventory

SOS Inventory adds advanced manufacturing and inventory capabilities to QuickBooks Online.

Detail: Detailed

Sync: Real-time

Pricing: Feature-based

From: $59.95/mo

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Linnworks

Linnworks is an enterprise multichannel operations platform for high-volume retailers with inventory management.

Detail: Summary

Sync: Batch

Pricing: Order-based + Features

From: £150/mo

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Free Native Connectors

Free native connectors from Shopify and Intuit for basic QuickBooks integration.

Detail: Summary

Sync: Payout-based

Pricing: Free

From: $0

View Details

All Tools

Webgility

Accounting-grade App

Webgility is an accounting-grade app that handles COGS, inventory, and multichannel sales with precision.

$109/mo Open deep-dive

A2X

Accounting-grade App

A2X is a marketplace-focused integration that specializes in payout reconciliation and sales summaries.

$19/mo Open deep-dive

Synder

Accounting-grade App

Synder automates multi-platform ecommerce accounting with detailed transaction sync and smart categorization rules.

$52/mo Open deep-dive

MyWorks

Integration Connector

MyWorks offers two-way sync between Shopify and QuickBooks with real-time updates and custom field mapping.

Free Open deep-dive

Finaloop

Full-Service Bookkeeping

Finaloop replaces QuickBooks entirely with an all-in-one ecommerce accounting platform plus expert bookkeeping service.

Contact for pricing Open deep-dive

Dext Commerce

Receipt & Expense Automation

Dext automates receipt capture and expense management with AI-powered data extraction for QuickBooks.

$22/mo Open deep-dive

SOS Inventory

Inventory Management

SOS Inventory adds advanced manufacturing and inventory capabilities to QuickBooks Online.

$59.95/mo Open deep-dive

Linnworks

Enterprise Multichannel Platform

Linnworks is an enterprise multichannel operations platform for high-volume retailers with inventory management.

£150/mo Open deep-dive

Free Native Connectors

Native Integration

Free native connectors from Shopify and Intuit for basic QuickBooks integration.

$0 Open deep-dive